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Model info
Transcription factorHif1a
ModelHIF1A_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusbnvKRCGTGhb
Best auROC (human)0.719
Best auROC (mouse)0.718
Peak sets in benchmark (human)39
Peak sets in benchmark (mouse)8
Aligned words515
TF familyPAS domain factors {1.2.5}
TF subfamilyAhr-like factors {1.2.5.1}
MGIMGI:106918
EntrezGeneGeneID:15251
(SSTAR profile)
UniProt IDHIF1A_MOUSE
UniProt ACQ61221
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.575570000000001
0.0005 7.920380000000001
0.0001 10.81849
GTEx tissue expression atlas Hif1a expression
Motifs in JASPAR
MA0259.1 (ARNT::HIF1A; Mus musculus/Rattus rattus/Homo sapiens/Oryctolagus cuniculus)
MA1106.1 (HIF1A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.020.024.022.014.019.042.030.045.056.057.078.08.016.047.010.0
0211.09.051.08.034.013.043.021.027.056.064.023.022.025.086.07.0
038.03.057.026.09.05.027.062.034.07.0101.0102.04.03.019.033.0
0450.01.04.00.016.00.02.00.0159.08.036.01.0142.05.072.04.0
053.0338.05.021.00.014.00.00.01.0104.01.08.00.05.00.00.0
060.00.04.00.015.00.0446.00.01.00.05.00.00.00.029.00.0
070.00.00.016.00.00.00.00.06.04.00.0474.00.00.00.00.0
080.00.06.00.00.00.04.00.00.00.00.00.02.01.0485.02.0
090.01.00.01.00.01.00.00.0122.0258.051.064.00.02.00.00.0
103.059.044.016.042.076.081.063.010.014.014.013.09.017.031.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.938-0.439-0.26-0.346-0.788-0.490.293-0.040.3610.5780.5950.907-1.328-0.6580.404-1.114
02-1.022-1.2150.485-1.3280.083-0.860.316-0.392-0.1440.5780.711-0.302-0.346-0.221.004-1.454
03-1.328-2.2340.595-0.181-1.215-1.77-0.1440.6790.083-1.4541.1651.174-1.975-2.234-0.490.054
040.465-3.126-1.975-4.4-0.658-4.4-2.584-4.41.617-1.3280.14-3.1261.504-1.770.828-1.975
05-2.2342.37-1.77-0.392-4.4-0.788-4.4-4.4-3.1261.194-3.126-1.328-4.4-1.77-4.4-4.4
06-4.4-4.4-1.975-4.4-0.721-4.42.647-4.4-3.126-4.4-1.77-4.4-4.4-4.4-0.074-4.4
07-4.4-4.4-4.4-0.658-4.4-4.4-4.4-4.4-1.6-1.975-4.42.708-4.4-4.4-4.4-4.4
08-4.4-4.4-1.6-4.4-4.4-4.4-1.975-4.4-4.4-4.4-4.4-4.4-2.584-3.1262.731-2.584
09-4.4-3.126-4.4-3.126-4.4-3.126-4.4-4.41.3532.10.4850.711-4.4-2.584-4.4-4.4
10-2.2340.630.339-0.6580.2930.8810.9450.695-1.114-0.788-0.788-0.86-1.215-0.599-0.008-1.328