Model info
Transcription factorHMGA1
ModelHMGA1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusnWATTWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words97
TF familyHMGA factors{8.2.1}
TF subfamilyHMGA1 (HMGI(Y)){8.2.1.0.1}
HGNC5010
EntrezGene3159
UniProt IDHMGA1_HUMAN
UniProt ACP17096
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.77557
0.0005 6.07911
0.0001 6.68981
GTEx tissue expression atlas HMGA1 expression
ReMap ChIP-seq dataset list HMGA1 datasets
Motifs in JASPAR
PCM
ACGT
0124.57117.01933.41719.284
0229.8847.8760.056.531
0379.9423.7760.010.573
040.00.00.094.29
051.9420.9710.091.378
0622.5485.8268.84657.071
0719.33810.611.03153.322
PWM
ACGT
010.04-0.3080.335-0.191
020.227-1.009-3.0790.848
031.188-1.615-3.079-0.747
04-3.079-3.079-3.0791.351
05-2.083-2.462-3.0791.32
06-0.042-1.267-0.9060.857
07-0.188-0.744-0.7080.79