Model info
Transcription factorHMGA2
ModelHMGA2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusAATAWhSSSSAATAT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words75
TF familyHMGA factors{8.2.1}
TF subfamilyHMGA2 (HMGI-C){8.2.1.0.2}
HGNC5009
EntrezGene8091
UniProt IDHMGA2_HUMAN
UniProt ACP52926
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.17521
0.0005 5.21841
0.0001 7.35081
GTEx tissue expression atlas HMGA2 expression
ReMap ChIP-seq dataset list HMGA2 datasets
Motifs in JASPAR
PCM
ACGT
0171.7521.2411.2411.241
0254.6210.00.020.855
0311.9170.00.063.559
0444.690.00.030.786
0539.7241.9860.99332.772
0612.9120.8558.93832.772
070.041.7129.7933.972
081.98624.82846.6761.986
090.037.73832.7724.966
101.98631.77940.7170.993
1171.5030.02.9790.993
1259.5860.9930.014.897
131.9860.9930.072.497
1459.5860.00.99314.897
151.491.491.4971.007
PWM
ACGT
011.295-2.151-2.151-2.151
021.027-2.915-2.9150.095
03-0.428-2.915-2.9151.176
040.83-2.915-2.9150.468
050.716-1.872-2.2640.529
06-0.3550.095-0.6890.529
07-2.9150.7630.437-1.373
08-1.8720.2610.873-1.872
09-2.9150.6660.529-1.194
10-1.8720.4990.74-2.264
111.292-2.915-1.592-2.264
121.112-2.264-2.915-0.222
13-1.872-2.264-2.9151.305
141.112-2.915-2.264-0.222
15-2.049-2.049-2.0491.285