Model info
| Transcription factor | Hnf1a | ||||||||
| Model | HNF1A_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGTTAWTvWTYdhYv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 175 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| MGI | MGI:98504 | ||||||||
| EntrezGene | GeneID:21405 (SSTAR profile) | ||||||||
| UniProt ID | HNF1A_MOUSE | ||||||||
| UniProt AC | P22361 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hnf1a expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.288 | 5.193 | 84.087 | 24.432 |
| 02 | 16.445 | 1.292 | 151.093 | 5.17 |
| 03 | 1.2 | 15.429 | 2.031 | 155.339 |
| 04 | 16.168 | 2.677 | 0.0 | 155.155 |
| 05 | 169.661 | 2.954 | 0.646 | 0.739 |
| 06 | 130.168 | 18.211 | 6.013 | 19.608 |
| 07 | 15.706 | 1.569 | 1.477 | 155.247 |
| 08 | 69.776 | 39.041 | 34.425 | 30.757 |
| 09 | 97.429 | 4.339 | 10.075 | 62.158 |
| 10 | 11.09 | 3.97 | 7.293 | 151.647 |
| 11 | 11.183 | 30.145 | 2.031 | 130.642 |
| 12 | 96.632 | 10.444 | 33.456 | 33.468 |
| 13 | 86.739 | 49.257 | 13.78 | 24.224 |
| 14 | 32.88 | 99.078 | 4.893 | 37.149 |
| 15 | 62.125 | 64.156 | 25.758 | 21.961 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.318 | -1.933 | 0.645 | -0.555 |
| 02 | -0.926 | -2.853 | 1.224 | -1.936 |
| 03 | -2.89 | -0.985 | -2.602 | 1.252 |
| 04 | -0.942 | -2.424 | -3.548 | 1.251 |
| 05 | 1.339 | -2.356 | -3.141 | -3.095 |
| 06 | 1.077 | -0.832 | -1.814 | -0.762 |
| 07 | -0.969 | -2.751 | -2.784 | 1.251 |
| 08 | 0.462 | -0.105 | -0.226 | -0.335 |
| 09 | 0.79 | -2.074 | -1.371 | 0.348 |
| 10 | -1.286 | -2.142 | -1.652 | 1.228 |
| 11 | -1.278 | -0.354 | -2.602 | 1.08 |
| 12 | 0.782 | -1.339 | -0.254 | -0.254 |
| 13 | 0.676 | 0.121 | -1.089 | -0.563 |
| 14 | -0.271 | 0.807 | -1.98 | -0.153 |
| 15 | 0.348 | 0.379 | -0.504 | -0.656 |