Model info
Transcription factorHnf4a
ModelHNF4A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvdRdbCAAAGTYCR
Best auROC (human)0.982967943572852
Best auROC (mouse)0.9815642824221709
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)33
Aligned words500
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyHNF-4 (NR2A){2.1.3.2}
MGI109128
EntrezGene15378
UniProt IDHNF4A_MOUSE
UniProt ACP49698
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.48511
0.0005 5.56551
0.0001 7.75042
GTEx tissue expression atlas Hnf4a expression
Motifs in JASPAR
PCM
ACGT
01173.094.0166.067.0
02218.015.0195.072.0
0365.017.0375.043.0
0462.027.0207.0204.0
0554.0220.0106.0120.0
0612.0456.01.031.0
07477.06.013.04.0
08402.03.082.013.0
09440.01.052.07.0
101.03.0491.05.0
1111.03.071.0415.0
127.0343.046.0104.0
134.0445.05.046.0
14370.021.055.054.0
PWM
ACGT
010.322-0.2810.281-0.613
020.551-2.0340.44-0.543
03-0.643-1.921.09-1.044
04-0.689-1.4890.50.485
05-0.8230.56-0.163-0.04
06-2.2341.285-3.903-1.358
071.33-2.819-2.163-3.126
081.16-3.325-0.415-2.163
091.25-3.903-0.86-2.694
10-3.903-3.3251.359-2.961
11-2.311-3.325-0.5561.191
12-2.6941.002-0.979-0.181
13-3.1261.261-2.961-0.979
141.077-1.725-0.805-0.823