Model info
Transcription factorHoxa10
ModelHXA10_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
C
Motif rank
0
ConsensusdnYnRTTTATGh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words10
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96171
EntrezGene15395
UniProt IDHXA10_MOUSE
UniProt ACP31310
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.41544
0.0005 6.04892
0.0001 7.35142
GTEx tissue expression atlas Hoxa10 expression
ReMap ChIP-seq dataset list Hoxa10 datasets
Motifs in JASPAR
PCM
ACGT
011.8130.7143.7913.681
025.1651.9781.9780.879
030.02.9670.9896.044
043.9560.9893.9561.099
055.0550.8793.0770.989
060.8790.00.09.121
070.00.00.010.0
080.9890.00.09.011
0910.00.00.00.0
100.00.00.010.0
110.9890.08.0220.989
124.1761.7580.9893.077
PWM
ACGT
01-0.253-0.8690.3510.325
020.624-0.186-0.186-0.749
03-1.6760.141-0.6760.767
040.388-0.6760.388-0.608
050.605-0.7490.172-0.676
06-0.749-1.676-1.6761.148
07-1.676-1.676-1.6761.235
08-0.676-1.676-1.6761.137
091.235-1.676-1.676-1.676
10-1.676-1.676-1.6761.235
11-0.676-1.6761.028-0.676
120.435-0.276-0.6760.172