Model info
Transcription factorHoxa1
ModelHXA1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
C
Motif rank
0
ConsensusnTGATGGATG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX1{3.1.1.1}
MGI96170
EntrezGene
UniProt IDHXA1_MOUSE
UniProt ACP09022
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.23413
0.0005 6.0806450000000005
0.0001 7.569755
GTEx tissue expression atlas Hoxa1 expression
Motifs in JASPAR
PCM
ACGT
011.2161.3241.3244.135
020.00.02.9195.081
031.0810.06.9190.0
048.00.00.00.0
050.00.00.08.0
060.00.06.0541.946
070.00.08.00.0
086.9191.0810.00.0
090.00.00.08.0
100.5140.5146.4590.514
PWM
ACGT
01-0.373-0.312-0.3120.614
02-1.578-1.5780.3110.799
03-0.454-1.5781.083-1.578
041.218-1.578-1.578-1.578
05-1.578-1.578-1.5781.218
06-1.578-1.5780.959-0.022
07-1.578-1.5781.218-1.578
081.083-0.454-1.578-1.578
09-1.578-1.578-1.5781.218
10-0.891-0.8911.019-0.891