Model info
Transcription factorHoxa1
ModelHXA1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
C
Motif rank
0
ConsensusnTGATGGATG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX1{3.1.1.1}
MGI96170
EntrezGene
UniProt IDHXA1_MOUSE
UniProt ACP09022
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.23435
0.0005 6.09561
0.0001 7.59634
GTEx tissue expression atlas Hoxa1 expression
ReMap ChIP-seq dataset list Hoxa1 datasets
Motifs in JASPAR
PCM
ACGT
011.2161.3241.3244.135
020.00.02.9195.081
031.0810.06.9190.0
048.00.00.00.0
050.00.00.08.0
060.00.06.0541.946
070.00.08.00.0
086.9191.0810.00.0
090.00.00.08.0
100.5140.5146.4590.514
PWM
ACGT
01-0.373-0.312-0.3120.614
02-1.578-1.5780.3110.799
03-0.454-1.5781.083-1.578
041.218-1.578-1.578-1.578
05-1.578-1.578-1.5781.218
06-1.578-1.5780.959-0.022
07-1.578-1.5781.218-1.578
081.083-0.454-1.578-1.578
09-1.578-1.578-1.5781.218
10-0.891-0.8911.019-0.891