Model info
Transcription factorHoxa5
ModelHXA5_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusYTvATTARYR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words54
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX5{3.1.1.5}
MGI96177
EntrezGene15402
UniProt IDHXA5_MOUSE
UniProt ACP09021
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.47327
0.0005 6.23174
0.0001 7.72947
GTEx tissue expression atlas Hoxa5 expression
Motifs in JASPAR
PCM
ACGT
014.65316.8912.97327.769
020.013.4810.89537.91
0315.3758.85324.9613.097
0452.2860.00.00.0
050.00.00.49751.788
060.00.00.052.286
0742.6620.06.2643.36
0833.8533.17112.7752.486
093.378.1720.89539.848
1013.0594.15129.6325.444
PWM
ACGT
01-0.9130.24-1.2670.716
02-2.6540.029-2.011.018
030.152-0.3570.613-1.236
041.332-2.654-2.654-2.654
05-2.654-2.654-2.2471.323
06-2.654-2.654-2.6541.332
071.133-2.654-0.662-1.173
080.907-1.218-0.021-1.398
09-1.171-0.428-2.011.066
10-0.001-1.0060.778-0.782