Model info
Transcription factorHoxa5
ModelHXA5_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusYTvATTARYR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words54
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX5{3.1.1.5}
MGI96177
EntrezGene15402
UniProt IDHXA5_MOUSE
UniProt ACP09021
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.47327
0.0005 6.23174
0.0001 7.72947
GTEx tissue expression atlas Hoxa5 expression
ReMap ChIP-seq dataset list Hoxa5 datasets
Motifs in JASPAR
PCM
ACGT
014.65316.8912.97327.769
020.013.4810.89537.91
0315.3758.85324.9613.097
0452.2860.00.00.0
050.00.00.49751.788
060.00.00.052.286
0742.6620.06.2643.36
0833.8533.17112.7752.486
093.378.1720.89539.848
1013.0594.15129.6325.444
PWM
ACGT
01-0.9130.24-1.2670.716
02-2.6540.029-2.011.018
030.152-0.3570.613-1.236
041.332-2.654-2.654-2.654
05-2.654-2.654-2.2471.323
06-2.654-2.654-2.6541.332
071.133-2.654-0.662-1.173
080.907-1.218-0.021-1.398
09-1.171-0.428-2.011.066
10-0.001-1.0060.778-0.782