Check the newest release v12
Model info
Transcription factorHoxa9
ModelHXA9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusndTGAYKKATKdbn
Best auROC (human)0.906
Best auROC (mouse)0.819
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96180
EntrezGeneGeneID:15405
(SSTAR profile)
UniProt IDHXA9_MOUSE
UniProt ACP09631
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.431510000000001
0.0005 12.14141
0.0001 15.604525
GTEx tissue expression atlas Hoxa9 expression
Motifs in JASPAR
MA0594.1 (Hoxa9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0178.09.047.015.077.010.016.017.076.05.040.017.040.05.025.023.0
0244.03.015.0209.04.01.00.024.022.02.02.0102.08.00.02.062.0
035.00.068.05.02.00.04.00.05.00.011.03.022.01.0361.013.0
0433.01.00.00.01.00.00.00.0426.02.011.05.020.00.00.01.0
0534.045.038.0363.00.00.01.02.07.01.01.02.00.01.00.05.0
0624.00.07.010.09.02.04.032.05.02.02.031.023.03.066.0280.0
074.07.026.024.00.00.07.00.011.03.053.012.012.067.0209.065.0
0826.01.00.00.076.00.00.01.0285.02.07.01.099.01.01.00.0
0912.031.037.0406.00.01.01.02.00.02.00.06.00.00.00.02.0
100.00.07.05.010.00.06.018.04.02.010.022.042.014.0281.079.0
117.02.044.03.05.00.02.09.070.013.0150.071.025.05.074.020.0
121.057.035.014.02.09.02.07.027.0135.052.056.014.032.037.020.0
136.023.010.05.056.055.028.094.027.028.034.037.08.034.023.032.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.907-1.2150.404-0.7210.894-1.114-0.658-0.5990.881-1.770.244-0.5990.244-1.77-0.22-0.302
020.339-2.234-0.7211.89-1.975-3.126-4.4-0.26-0.346-2.584-2.5841.174-1.328-4.4-2.5840.679
03-1.77-4.40.771-1.77-2.584-4.4-1.975-4.4-1.77-4.4-1.022-2.234-0.346-3.1262.436-0.86
040.054-3.126-4.4-4.4-3.126-4.4-4.4-4.42.601-2.584-1.022-1.77-0.439-4.4-4.4-3.126
050.0830.3610.1932.441-4.4-4.4-3.126-2.584-1.454-3.126-3.126-2.584-4.4-3.126-4.4-1.77
06-0.26-4.4-1.454-1.114-1.215-2.584-1.9750.023-1.77-2.584-2.584-0.008-0.302-2.2340.7412.182
07-1.975-1.454-0.181-0.26-4.4-4.4-1.454-4.4-1.022-2.2340.523-0.938-0.9380.7561.890.726
08-0.181-3.126-4.4-4.40.881-4.4-4.4-3.1262.199-2.584-1.454-3.1261.145-3.126-3.126-4.4
09-0.938-0.0080.1672.553-4.4-3.126-3.126-2.584-4.4-2.584-4.4-1.6-4.4-4.4-4.4-2.584
10-4.4-4.4-1.454-1.77-1.114-4.4-1.6-0.543-1.975-2.584-1.114-0.3460.293-0.7882.1850.92
11-1.454-2.5840.339-2.234-1.77-4.4-2.584-1.2150.8-0.861.5590.814-0.22-1.770.855-0.439
12-3.1260.5950.112-0.788-2.584-1.215-2.584-1.454-0.1441.4540.5040.578-0.7880.0230.167-0.439
13-1.6-0.302-1.114-1.770.5780.56-0.1081.093-0.144-0.1080.0830.167-1.3280.083-0.3020.023