Model info
Transcription factorHoxa9
ModelHXA9_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusdTGATTKAYdd
Best auROC (human)0.8830062243531501
Best auROC (mouse)0.7572393321853359
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96180
EntrezGene15405
UniProt IDHXA9_MOUSE
UniProt ACP09631
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.31572
0.0005 6.20276
0.0001 7.92922
GTEx tissue expression atlas Hoxa9 expression
Motifs in JASPAR
PCM
ACGT
01230.053.0117.0100.0
0284.04.023.0389.0
0353.05.0420.022.0
04477.2510.254.258.25
0514.254.2514.25467.25
0622.250.2520.25457.25
0719.2534.2563.25383.25
08463.259.2523.254.25
0916.2576.2522.25385.25
1097.2519.25237.25146.25
11138.2530.25246.2585.25
PWM
ACGT
010.604-0.841-0.065-0.22
02-0.392-3.126-1.641.127
03-0.841-2.9611.203-1.681
041.331-2.372-3.082-2.558
05-2.08-3.082-2.081.31
06-1.671-4.251-1.7591.288
07-1.806-1.263-0.6691.112
081.301-2.461-1.63-3.082
09-1.961-0.486-1.6711.117
10-0.248-1.8060.6350.155
110.1-1.3810.672-0.377