Model info
Transcription factorHOXB1
ModelHXB1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusWGATGGATGG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words15
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX1{3.1.1.1}
HGNC5111
EntrezGene3211
UniProt IDHXB1_HUMAN
UniProt ACP14653
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.87381
0.0005 5.57794
0.0001 7.82928
GTEx tissue expression atlas HOXB1 expression
ReMap ChIP-seq dataset list HOXB1 datasets
Motifs in JASPAR
PCM
ACGT
014.5710.01.0169.254
020.00.014.840.0
0314.840.00.00.0
040.00.00.014.84
050.00.09.2545.586
060.00.014.840.0
0714.840.00.00.0
080.00.00.014.84
090.02.53912.3010.0
101.0161.01612.8090.0
PWM
ACGT
010.179-1.872-0.9530.817
02-1.872-1.8721.264-1.872
031.264-1.872-1.872-1.872
04-1.872-1.872-1.8721.264
05-1.872-1.8720.8170.356
06-1.872-1.8721.264-1.872
071.264-1.872-1.872-1.872
08-1.872-1.872-1.8721.264
09-1.872-0.3111.085-1.872
10-0.953-0.9531.123-1.872