Model info
Transcription factorHOXB2
ModelHXB2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensushvGAAbvTTCYAGAh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words420
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX2{3.1.1.2}
HGNC5113
EntrezGene3212
UniProt IDHXB2_HUMAN
UniProt ACP14652
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.20191
0.0005 4.45011
0.0001 7.03201
GTEx tissue expression atlas HOXB2 expression
ReMap ChIP-seq dataset list HOXB2 datasets
Motifs in JASPAR
PCM
ACGT
0197.076.071.0176.0
02226.074.098.022.0
0328.255.25375.2511.25
04389.258.256.2516.25
05381.07.04.028.0
0661.0169.079.0111.0
07145.0101.0135.039.0
0823.06.06.0385.0
099.02.014.0395.0
100.0420.00.00.0
110.053.051.0316.0
12352.2525.2539.253.25
133.250.25416.250.25
14397.2510.253.259.25
15201.569.568.580.5
PWM
ACGT
01-0.078-0.318-0.3850.511
020.759-0.344-0.068-1.511
03-1.275-2.7571.263-2.122
041.3-2.39-2.619-1.791
051.279-2.527-2.962-1.284
06-0.5330.471-0.280.055
070.319-0.0380.248-0.967
08-1.469-2.652-2.6521.289
09-2.316-3.413-1.9271.314
10-4.2561.376-4.256-4.256
11-4.256-0.67-0.7071.092
121.2-1.381-0.961-3.108
13-3.108-4.1031.367-4.103
141.32-2.204-3.108-2.292
150.645-0.405-0.42-0.261