Model info
| Transcription factor | Hoxb6 | ||||||||
| Model | HXB6_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dWTGATTKATGCn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 7 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX6-7 {3.1.1.6} | ||||||||
| MGI | MGI:96187 | ||||||||
| EntrezGene | GeneID:15414 (SSTAR profile) | ||||||||
| UniProt ID | HXB6_MOUSE | ||||||||
| UniProt AC | P09023 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxb6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.317 | 0.633 | 1.572 | 1.478 |
| 02 | 3.472 | 0.845 | 0.0 | 2.683 |
| 03 | 0.0 | 0.845 | 0.0 | 6.155 |
| 04 | 0.845 | 0.0 | 6.155 | 0.0 |
| 05 | 7.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 7.0 |
| 07 | 0.0 | 0.0 | 0.0 | 7.0 |
| 08 | 0.845 | 0.0 | 3.528 | 2.628 |
| 09 | 6.155 | 0.0 | 0.845 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 7.0 |
| 11 | 0.0 | 0.0 | 6.155 | 0.845 |
| 12 | 3.472 | 3.528 | 0.0 | 0.0 |
| 13 | 3.528 | 1.783 | 0.845 | 0.845 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.531 | -0.692 | -0.083 | -0.13 |
| 02 | 0.571 | -0.519 | -1.525 | 0.349 |
| 03 | -1.525 | -0.519 | -1.525 | 1.088 |
| 04 | -0.519 | -1.525 | 1.088 | -1.525 |
| 05 | 1.208 | -1.525 | -1.525 | -1.525 |
| 06 | -1.525 | -1.525 | -1.525 | 1.208 |
| 07 | -1.525 | -1.525 | -1.525 | 1.208 |
| 08 | -0.519 | -1.525 | 0.585 | 0.331 |
| 09 | 1.088 | -1.525 | -0.519 | -1.525 |
| 10 | -1.525 | -1.525 | -1.525 | 1.208 |
| 11 | -1.525 | -1.525 | 1.088 | -0.519 |
| 12 | 0.571 | 0.585 | -1.525 | -1.525 |
| 13 | 0.585 | 0.015 | -0.519 | -0.519 |