Model info
Transcription factorHOXC10
ModelHXC10_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length19
Quality
D
Motif rank
0
ConsensusddWWWddnndKTTWAYddb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words9418
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
HGNC5122
EntrezGene3226
UniProt IDHXC10_HUMAN
UniProt ACQ9NYD6
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.32621
0.0005 7.14621
0.0001 8.72481
GTEx tissue expression atlas HOXC10 expression
ReMap ChIP-seq dataset list HOXC10 datasets
Motifs in JASPAR
PCM
ACGT
012107.6091461.3071631.7973779.569
022789.2581026.4221069.2254095.377
033772.811593.037621.1743993.261
043562.578411.763438.534567.411
053853.82366.881823.6313935.951
064238.137513.4161437.3742791.354
073689.3161471.7091757.9192061.338
082655.4241687.591948.692688.578
092275.1751741.8571940.5323022.718
102219.9971254.231811.2783694.778
11836.871916.3271118.0286109.056
12202.598119.992850.2557807.437
135.316118.42475.7838780.76
143323.482147.606128.2095380.984
158868.38241.35969.8820.66
16360.0861544.958490.8976584.342
171039.049824.4623533.3663583.406
184236.673806.4062848.4951088.708
191505.043832.2951820.8081822.14
PWM
ACGT
01-0.063-0.429-0.3190.52
020.217-0.781-0.7410.601
030.519-1.328-1.2820.575
040.461-1.692-1.6290.71
050.54-1.806-1.0010.561
060.635-1.472-0.4450.218
070.496-0.422-0.244-0.085
080.168-0.285-0.1410.18
090.013-0.253-0.1460.297
10-0.011-0.581-0.2140.498
11-0.985-0.895-0.6961.0
12-2.395-2.911-0.9691.246
13-5.69-2.924-3.361.363
140.392-2.708-2.8460.874
151.373-3.942-3.439-6.641
16-1.825-0.373-1.5171.075
17-0.769-1.00.4530.467
180.635-1.0220.238-0.723
19-0.3990.534-0.209-0.208