Model info
Transcription factorHOXC11
ModelHXC11_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusdKTTWAYKRbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words318
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
HGNC5123
EntrezGene3227
UniProt IDHXC11_HUMAN
UniProt ACO43248
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.18691
0.0005 5.88555
0.0001 7.30138
GTEx tissue expression atlas HOXC11 expression
ReMap ChIP-seq dataset list HOXC11 datasets
Motifs in JASPAR
PCM
ACGT
01100.26734.92680.859103.525
0235.62622.91344.834216.203
039.54420.3814.396275.257
0417.8384.8075.622291.309
05116.2196.4361.018195.903
06310.6523.2580.05.666
071.629202.8157.827107.305
089.8813.103244.81751.775
09236.9569.34946.6426.631
1022.727177.13146.73872.98
1155.592124.36449.92689.695
PWM
ACGT
010.224-0.8050.0120.255
02-0.786-1.206-0.5640.984
03-2.002-1.316-1.6361.224
04-1.44-2.566-2.4441.281
050.369-2.335-3.4990.886
061.345-2.851-4.033-2.437
07-3.2770.921-2.1720.29
08-1.972-1.7211.108-0.424
091.075-2.02-0.526-1.064
10-1.2140.786-0.524-0.089
11-0.3550.436-0.460.114