Model info
Transcription factorHOXC12
ModelHXC12_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length12
Quality
D
Motif rank
0
ConsensusdWTTTAYKRYbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2466
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
HGNC5124
EntrezGene3228
UniProt IDHXC12_HUMAN
UniProt ACP31275
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.36234
0.0005 6.32425
0.0001 8.04166
GTEx tissue expression atlas HOXC12 expression
ReMap ChIP-seq dataset list HOXC12 datasets
Motifs in JASPAR
PCM
ACGT
01742.75285.75546.75889.75
02279.25143.25251.251791.25
0339.520.525.52379.5
0430.756.756.752420.75
05353.04.022.02086.0
062453.01.02.09.0
075.01207.015.01238.0
0890.0108.01343.0924.0
091819.075.0457.0114.0
10135.01467.0328.0535.0
11384.0880.0402.0799.0
12409.5464.5465.51125.5
PWM
ACGT
010.186-0.765-0.1190.366
02-0.788-1.449-0.8931.065
03-2.702-3.315-3.1141.349
04-2.939-4.263-4.2631.366
05-0.555-4.643-3.2511.217
061.379-5.344-5.052-4.033
07-4.4880.671-3.5960.696
08-1.906-1.7270.7770.404
091.08-2.084-0.298-1.674
10-1.5070.865-0.628-0.141
11-0.4710.355-0.4260.259
12-0.407-0.282-0.280.601