Model info
Transcription factorHOXC13
ModelHXC13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusndTTTTACbvb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1231
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
HGNC5125
EntrezGene3229
UniProt IDHXC13_HUMAN
UniProt ACP31276
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.40403
0.0005 6.40163
0.0001 7.88549
GTEx tissue expression atlas HOXC13 expression
ReMap ChIP-seq dataset list HOXC13 datasets
Motifs in JASPAR
PCM
ACGT
01412.75197.75226.75393.75
02330.0121.0334.0446.0
0378.7553.7556.751041.75
0410.022.06.01193.0
052.012.04.01213.0
0666.016.09.01140.0
071199.028.04.00.0
0817.01003.011.0200.0
09183.0197.0563.0288.0
10626.25191.25224.25189.25
11182.0226.0628.0195.0
PWM
ACGT
010.292-0.439-0.3030.245
020.069-0.9250.0810.369
03-1.346-1.718-1.6661.215
04-3.269-2.566-3.6841.351
05-4.406-3.112-3.9811.367
06-1.519-2.857-3.3571.305
071.356-2.341-3.981-5.159
08-2.8021.177-3.187-0.428
09-0.516-0.4430.601-0.066
100.708-0.472-0.314-0.483
11-0.521-0.3070.71-0.453