Model info
Transcription factorHOXC6
ModelHXC6_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusWTGATTTATTWCTTT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words7
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX6-7{3.1.1.6}
HGNC5128
EntrezGene3223
UniProt IDHXC6_HUMAN
UniProt ACP09630
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4537
0.0005 6.22627
0.0001 8.3251
GTEx tissue expression atlas HOXC6 expression
ReMap ChIP-seq dataset list HOXC6 datasets
Motifs in JASPAR
PCM
ACGT
014.6380.1461.0211.196
020.00.00.07.0
030.00.07.00.0
047.00.00.00.0
050.00.00.07.0
060.00.00.07.0
070.00.01.055.95
087.00.00.00.0
090.00.00.07.0
100.00.01.055.95
115.0750.5830.2921.05
120.05.3671.050.583
131.050.00.05.95
140.00.00.07.0
150.1460.1461.1965.513
PWM
ACGT
010.829-1.263-0.395-0.285
02-1.525-1.525-1.5251.208
03-1.525-1.5251.208-1.525
041.208-1.525-1.525-1.525
05-1.525-1.525-1.5251.208
06-1.525-1.525-1.5251.208
07-1.525-1.525-0.3751.057
081.208-1.525-1.525-1.525
09-1.525-1.525-1.5251.208
10-1.525-1.525-0.3751.057
110.911-0.737-1.056-0.375
12-1.5250.962-0.375-0.737
13-0.375-1.525-1.5251.057
14-1.525-1.525-1.5251.208
15-1.263-1.263-0.2850.987