Model info
Transcription factorHOXC8
ModelHXC8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensusnTTSATTRAnKSnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words9
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX8{3.1.1.7}
HGNC5129
EntrezGene3224
UniProt IDHXC8_HUMAN
UniProt ACP31273
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.56561
0.0005 6.18651
0.0001 7.42553
GTEx tissue expression atlas HOXC8 expression
ReMap ChIP-seq dataset list HOXC8 datasets
Motifs in JASPAR
PCM
ACGT
011.4922.5031.4923.514
020.00.02.0226.978
030.01.0110.07.989
040.913.0345.0560.0
058.090.00.00.91
062.0220.00.06.978
071.9210.00.07.079
083.9440.04.0451.011
099.00.00.00.0
101.0111.0111.0115.966
112.0220.04.0452.933
121.9214.0453.0340.0
131.0113.9443.0341.011
141.5174.4491.5171.517
PWM
ACGT
01-0.3160.086-0.3160.373
02-1.628-1.628-0.0850.989
03-1.628-0.584-1.6281.115
04-0.6510.2470.694-1.628
051.127-1.628-1.628-0.651
06-0.085-1.628-1.6280.989
07-0.125-1.628-1.6281.002
080.473-1.6280.495-0.584
091.227-1.628-1.628-1.628
10-0.584-0.584-0.5840.845
11-0.085-1.6280.4950.218
12-0.1250.4950.247-1.628
13-0.5840.4730.247-0.584
14-0.3040.58-0.304-0.304