Model info
Transcription factorHoxc8
ModelHXC8_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensusnTTSATTRAnKSnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words9
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX8{3.1.1.7}
MGI96198
EntrezGene15426
UniProt IDHXC8_MOUSE
UniProt ACP09025
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.47406
0.0005 6.087260000000001
0.0001 7.336094999999999
GTEx tissue expression atlas Hoxc8 expression
Motifs in JASPAR
PCM
ACGT
011.4922.5031.4923.514
020.00.02.0226.978
030.01.0110.07.989
040.913.0345.0560.0
058.090.00.00.91
062.0220.00.06.978
071.9210.00.07.079
083.9440.04.0451.011
099.00.00.00.0
101.0111.0111.0115.966
112.0220.04.0452.933
121.9214.0453.0340.0
131.0113.9443.0341.011
141.5174.4491.5171.517
PWM
ACGT
01-0.3160.086-0.3160.373
02-1.628-1.628-0.0850.989
03-1.628-0.584-1.6281.115
04-0.6510.2470.694-1.628
051.127-1.628-1.628-0.651
06-0.085-1.628-1.6280.989
07-0.125-1.628-1.6281.002
080.473-1.6280.495-0.584
091.227-1.628-1.628-1.628
10-0.584-0.584-0.5840.845
11-0.085-1.6280.4950.218
12-0.1250.4950.247-1.628
13-0.5840.4730.247-0.584
14-0.3040.58-0.304-0.304