Check the newest release v12
Model info
Transcription factorHOXC9
(GeneCards)
ModelHXC9_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnWTTWATKRShn
Best auROC (human)0.877
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5130
EntrezGeneGeneID:3225
(SSTAR profile)
UniProt IDHXC9_HUMAN
UniProt ACP31274
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.186770000000001
0.0005 13.12501
0.0001 16.807915
GTEx tissue expression atlas HOXC9 expression
ReMap ChIP-seq dataset list HOXC9 datasets
Motifs in JASPAR
MA0485.1 (Hoxc9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.014.010.091.029.011.01.053.028.018.02.047.024.021.013.0112.0
028.00.05.094.02.02.01.059.00.00.02.024.06.06.07.0284.0
030.00.00.016.00.00.00.08.00.00.00.015.02.00.03.0456.0
041.00.00.01.00.00.00.00.01.00.01.01.098.030.01.0366.0
05100.00.00.00.029.01.00.00.02.00.00.00.0360.03.04.01.0
063.013.02.0473.00.01.00.03.00.00.00.04.00.00.00.01.0
070.00.03.00.03.00.03.08.00.00.00.02.031.01.0206.0243.0
085.03.025.01.00.01.00.00.040.05.0148.019.076.02.0163.012.0
092.097.018.04.01.08.02.00.013.0234.055.034.00.020.05.07.0
101.08.01.06.0107.0131.03.0118.011.052.04.013.05.013.03.024.0
1123.023.046.032.085.047.07.065.03.06.02.00.024.032.054.051.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.788-1.1141.061-0.074-1.022-3.1260.523-0.108-0.543-2.5840.404-0.26-0.392-0.861.268
02-1.328-4.4-1.771.093-2.584-2.584-3.1260.63-4.4-4.4-2.584-0.26-1.6-1.6-1.4542.196
03-4.4-4.4-4.4-0.658-4.4-4.4-4.4-1.328-4.4-4.4-4.4-0.721-2.584-4.4-2.2342.669
04-3.126-4.4-4.4-3.126-4.4-4.4-4.4-4.4-3.126-4.4-3.126-3.1261.135-0.04-3.1262.449
051.155-4.4-4.4-4.4-0.074-3.126-4.4-4.4-2.584-4.4-4.4-4.42.433-2.234-1.975-3.126
06-2.234-0.86-2.5842.706-4.4-3.126-4.4-2.234-4.4-4.4-4.4-1.975-4.4-4.4-4.4-3.126
07-4.4-4.4-2.234-4.4-2.234-4.4-2.234-1.328-4.4-4.4-4.4-2.584-0.008-3.1261.8752.04
08-1.77-2.234-0.22-3.126-4.4-3.126-4.4-4.40.244-1.771.545-0.490.881-2.5841.642-0.938
09-2.5841.124-0.543-1.975-3.126-1.328-2.584-4.4-0.862.0030.560.083-4.4-0.439-1.77-1.454
10-3.126-1.328-3.126-1.61.2221.424-2.2341.32-1.0220.504-1.975-0.86-1.77-0.86-2.234-0.26
11-0.302-0.3020.3830.0230.9930.404-1.4540.726-2.234-1.6-2.584-4.4-0.260.0230.5420.485