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Model info
Transcription factorHoxc9
ModelHXC9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnWRATTTAYdRbbn
Best auROC (human)
Best auROC (mouse)0.958
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words500
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96199
EntrezGeneGeneID:15427
(SSTAR profile)
UniProt IDHXC9_MOUSE
UniProt ACP09633
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.28076
0.0005 12.046710000000001
0.0001 15.637625
GTEx tissue expression atlas Hoxc9 expression
Motifs in JASPAR
MA0485.1 (Hoxc9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.09.019.069.036.01.01.074.037.04.010.0108.010.00.016.062.0
0223.04.083.017.07.01.06.00.013.00.026.07.055.06.0203.049.0
0384.03.00.011.07.01.00.03.0274.010.03.031.056.04.00.013.0
0412.04.04.0401.01.00.00.017.00.00.00.03.01.01.00.056.0
051.00.00.013.00.00.00.05.00.00.00.04.04.03.08.0462.0
060.00.00.05.00.00.00.03.01.00.03.04.031.08.024.0421.0
0732.00.00.00.08.00.00.00.027.00.00.00.0426.02.04.01.0
0822.0111.017.0343.00.00.00.02.00.01.01.02.00.00.00.01.0
094.00.06.012.047.02.023.040.00.00.08.010.044.010.0205.089.0
1017.04.065.09.08.02.01.01.056.014.0141.031.028.09.097.017.0
117.062.019.021.03.019.00.07.027.0177.044.056.05.024.015.014.0
126.09.017.010.056.0122.014.090.09.036.021.012.011.044.035.08.0
1311.023.033.015.059.061.018.073.018.028.019.022.013.033.045.029.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.339-1.215-0.490.7850.14-3.126-3.1260.8550.167-1.975-1.1141.231-1.114-4.4-0.6580.679
02-0.302-1.9750.969-0.599-1.454-3.126-1.6-4.4-0.86-4.4-0.181-1.4540.56-1.61.8610.445
030.981-2.234-4.4-1.022-1.454-3.126-4.4-2.2342.16-1.114-2.234-0.0080.578-1.975-4.4-0.86
04-0.938-1.975-1.9752.541-3.126-4.4-4.4-0.599-4.4-4.4-4.4-2.234-3.126-3.126-4.40.578
05-3.126-4.4-4.4-0.86-4.4-4.4-4.4-1.77-4.4-4.4-4.4-1.975-1.975-2.234-1.3282.682
06-4.4-4.4-4.4-1.77-4.4-4.4-4.4-2.234-3.126-4.4-2.234-1.975-0.008-1.328-0.262.589
070.023-4.4-4.4-4.4-1.328-4.4-4.4-4.4-0.144-4.4-4.4-4.42.601-2.584-1.975-3.126
08-0.3461.259-0.5992.384-4.4-4.4-4.4-2.584-4.4-3.126-3.126-2.584-4.4-4.4-4.4-3.126
09-1.975-4.4-1.6-0.9380.404-2.584-0.3020.244-4.4-4.4-1.328-1.1140.339-1.1141.8711.039
10-0.599-1.9750.726-1.215-1.328-2.584-3.126-3.1260.578-0.7881.497-0.008-0.108-1.2151.124-0.599
11-1.4540.679-0.49-0.392-2.234-0.49-4.4-1.454-0.1441.7240.3390.578-1.77-0.26-0.721-0.788
12-1.6-1.215-0.599-1.1140.5781.353-0.7881.05-1.2150.14-0.392-0.938-1.0220.3390.112-1.328
13-1.022-0.3020.054-0.7210.630.663-0.5430.841-0.543-0.108-0.49-0.346-0.860.0540.361-0.074