Model info
Transcription factorHoxc9
ModelHXC9_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusWRATTdAYdRbh
Best auROC (human)
Best auROC (mouse)0.9549560633692685
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96199
EntrezGene15427
UniProt IDHXC9_MOUSE
UniProt ACP09633
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.275074999999999
0.0005 6.108135
0.0001 7.791125
GTEx tissue expression atlas Hoxc9 expression
Motifs in JASPAR
PCM
ACGT
01125.09.056.0310.0
0292.03.0351.054.0
03411.023.08.058.0
0411.05.010.0474.0
058.03.011.0478.0
0642.023.042.0393.0
07481.07.010.02.0
0820.091.019.0370.0
0985.016.0234.0165.0
10104.027.0322.047.0
1138.0281.080.0101.0
1297.0207.060.0136.0
PWM
ACGT
010.0-2.484-0.7880.901
02-0.302-3.3251.025-0.823
031.182-1.64-2.584-0.754
04-2.311-2.961-2.3941.324
05-2.584-3.325-2.3111.332
06-1.067-1.64-1.0671.137
071.338-2.694-2.394-3.573
08-1.77-0.313-1.8181.077
09-0.38-1.9750.6210.275
10-0.181-1.4890.939-0.958
11-1.1630.803-0.439-0.21
12-0.250.5-0.7210.083