Model info
Transcription factorHOXD13
ModelHXD13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusWTTAYKRKRGM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
HGNC5136
EntrezGene3239
UniProt IDHXD13_HUMAN
UniProt ACP35453
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.46661
0.0005 6.03761
0.0001 7.19661
GTEx tissue expression atlas HOXD13 expression
ReMap ChIP-seq dataset list HOXD13 datasets
Motifs in JASPAR
PCM
ACGT
012.6571.5261.5267.291
020.00.01.01711.983
031.0170.02.2619.722
0410.2020.2540.2542.289
050.9332.9670.2548.846
061.2720.2542.9678.507
078.3931.2722.4020.933
080.2540.9338.283.533
095.7650.06.2171.017
100.00.011.3041.696
118.6482.2040.5091.639
PWM
ACGT
01-0.165-0.585-0.5850.712
02-1.803-1.803-0.8531.177
03-0.853-1.803-0.2930.98
041.025-1.469-1.469-0.284
05-0.905-0.075-1.4690.891
06-0.71-1.469-0.0750.855
070.842-0.71-0.246-0.905
08-1.469-0.9050.830.07
090.499-1.8030.567-0.853
10-1.803-1.8031.122-0.51
110.87-0.313-1.219-0.534