Model info
Transcription factorHoxd13
ModelHXD13_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusWTTAYKRKRGM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96205
EntrezGeneGeneID:15433
(SSTAR profile)
UniProt IDHXD13_MOUSE
UniProt ACP70217
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.40964
0.0005 5.980935000000001
0.0001 7.14818
GTEx tissue expression atlas Hoxd13 expression
Motifs in JASPAR
PCM
ACGT
012.6571.5261.5267.291
020.00.01.01711.983
031.0170.02.2619.722
0410.2020.2540.2542.289
050.9332.9670.2548.846
061.2720.2542.9678.507
078.3931.2722.4020.933
080.2540.9338.283.533
095.7650.06.2171.017
100.00.011.3041.696
118.6482.2040.5091.639
PWM
ACGT
01-0.165-0.585-0.5850.712
02-1.803-1.803-0.8531.177
03-0.853-1.803-0.2930.98
041.025-1.469-1.469-0.284
05-0.905-0.075-1.4690.891
06-0.71-1.469-0.0750.855
070.842-0.71-0.246-0.905
08-1.469-0.9050.830.07
090.499-1.8030.567-0.853
10-1.803-1.8031.122-0.51
110.87-0.313-1.219-0.534