Model info
Transcription factorHOXD3
ModelHXD3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnRbTAATTRbd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words601
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX3{3.1.1.3}
HGNC5137
EntrezGene3232
UniProt IDHXD3_HUMAN
UniProt ACP31249
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.52801
0.0005 6.32252
0.0001 7.70681
GTEx tissue expression atlas HOXD3 expression
ReMap ChIP-seq dataset list HOXD3 datasets
Motifs in JASPAR
PCM
ACGT
01123.75147.75188.75136.75
02146.540.5343.566.5
0329.75126.75168.75271.75
040.750.753.75591.75
05548.00.049.00.0
06542.00.055.00.0
070.00.062.0535.0
085.05.0119.0468.0
09431.012.0135.019.0
10100.5107.5274.5114.5
1199.2592.25258.25147.25
PWM
ACGT
01-0.185-0.010.233-0.087
02-0.018-1.2760.828-0.795
03-1.571-0.1620.1220.594
04-4.163-4.163-3.341.37
051.293-4.548-1.092-4.548
061.282-4.548-0.98-4.548
07-4.548-4.548-0.8641.269
08-3.13-3.13-0.2241.136
091.054-2.406-0.099-1.991
10-0.39-0.3240.604-0.262
11-0.403-0.4750.544-0.013