Model info
Transcription factorHoxd9
ModelHXD9_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusAnWTTnATnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96210
EntrezGene15438
UniProt IDHXD9_MOUSE
UniProt ACP28357
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4677
0.0005 6.10507
0.0001 7.50935
GTEx tissue expression atlas Hoxd9 expression
ReMap ChIP-seq dataset list Hoxd9 datasets
Motifs in JASPAR
PCM
ACGT
015.250.250.250.25
023.00.03.00.0
032.01.00.03.0
041.00.00.05.0
050.00.00.06.0
062.01.01.02.0
076.00.00.00.0
080.00.00.06.0
090.00.03.03.0
102.250.252.251.25
PWM
ACGT
011.073-1.026-1.026-1.026
020.571-1.470.571-1.47
030.228-0.297-1.470.571
04-0.297-1.47-1.471.028
05-1.47-1.47-1.471.197
060.228-0.297-0.2970.228
071.197-1.47-1.47-1.47
08-1.47-1.47-1.471.197
09-1.47-1.470.5710.571
100.326-1.0260.326-0.137