Model info
Transcription factorHoxd9
ModelHXD9_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusAnWTTnATnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96210
EntrezGene15438
UniProt IDHXD9_MOUSE
UniProt ACP28357
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4623349999999995
0.0005 6.0952
0.0001 7.4754249999999995
GTEx tissue expression atlas Hoxd9 expression
Motifs in JASPAR
PCM
ACGT
015.250.250.250.25
023.00.03.00.0
032.01.00.03.0
041.00.00.05.0
050.00.00.06.0
062.01.01.02.0
076.00.00.00.0
080.00.00.06.0
090.00.03.03.0
102.250.252.251.25
PWM
ACGT
011.073-1.026-1.026-1.026
020.571-1.470.571-1.47
030.228-0.297-1.470.571
04-0.297-1.47-1.471.028
05-1.47-1.47-1.471.197
060.228-0.297-0.2970.228
071.197-1.47-1.47-1.47
08-1.47-1.47-1.471.197
09-1.47-1.470.5710.571
100.326-1.0260.326-0.137