Model info
Transcription factorIRF1
ModelIRF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusvRRWndGAAASWGAAAShvv
Best auROC (human)0.9973105784702172
Best auROC (mouse)0.9976231322668374
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)18
Aligned words499
TF familyInterferon-regulatory factors{3.5.3}
TF subfamilyIRF-1{3.5.3.0.1}
HGNC6116
EntrezGene3659
UniProt IDIRF1_HUMAN
UniProt ACP10914
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.99391
0.0005 5.29681
0.0001 7.95831
PCM
ACGT
01169.088.0178.064.0
02302.049.096.052.0
03328.048.064.059.0
04367.037.039.056.0
05155.0114.0133.097.0
06149.069.076.0205.0
0783.04.0410.02.0
08466.05.023.05.0
09493.01.00.05.0
10491.01.03.04.0
1168.0182.0234.015.0
12100.050.011.0338.0
1353.02.0443.01.0
14468.08.021.02.0
15480.00.014.05.0
16492.02.02.03.0
1722.0180.0273.024.0
1898.0121.038.0242.0
19234.062.0154.049.0
20218.080.0134.067.0
PWM
ACGT
010.3-0.3440.352-0.656
020.877-0.916-0.258-0.858
030.959-0.936-0.656-0.735
041.071-1.187-1.136-0.786
050.215-0.0890.063-0.248
060.176-0.582-0.4880.492
07-0.401-3.1241.181-3.571
081.309-2.959-1.638-2.959
091.365-3.901-4.398-2.959
101.361-3.901-3.323-3.124
11-0.5970.3740.623-2.032
12-0.218-0.896-2.3090.989
13-0.84-3.5711.258-3.901
141.313-2.582-1.723-3.571
151.338-4.398-2.094-2.959
161.363-3.571-3.571-3.323
17-1.6790.3630.776-1.598
18-0.238-0.03-1.1610.657
190.623-0.6870.208-0.916
200.553-0.4370.071-0.611