Model info
Transcription factorIrf1
ModelIRF1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusvRMWnhGAAASYGAAASYvd
Best auROC (human)0.9973877067414709
Best auROC (mouse)0.9985060776219963
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)18
Aligned words504
TF familyInterferon-regulatory factors{3.5.3}
TF subfamilyIRF-1{3.5.3.0.1}
MGI96590
EntrezGene16362
UniProt IDIRF1_MOUSE
UniProt ACP15314
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.92061
0.0005 4.31651
0.0001 7.18211
GTEx tissue expression atlas Irf1 expression
Motifs in JASPAR
PCM
ACGT
01154.074.0210.062.0
02273.036.0149.042.0
03344.059.050.047.0
04359.042.046.053.0
05129.0117.0154.0100.0
06127.093.072.0208.0
0771.02.0425.02.0
08475.03.022.00.0
09494.01.01.04.0
10499.00.00.01.0
1160.0190.0242.08.0
1253.098.02.0347.0
1338.02.0458.02.0
14468.05.025.02.0
15496.00.03.01.0
16488.01.05.06.0
1723.0208.0257.012.0
1859.0142.024.0275.0
19212.066.0162.060.0
20232.069.0127.072.0
PWM
ACGT
010.206-0.5160.514-0.689
020.774-1.2150.174-1.067
031.004-0.737-0.898-0.958
041.047-1.067-0.979-0.841
050.031-0.0650.206-0.22
060.016-0.291-0.5430.504
07-0.556-3.5731.215-3.573
081.326-3.325-1.681-4.4
091.365-3.903-3.903-3.126
101.375-4.4-4.4-3.903
11-0.7210.4150.655-2.584
12-0.841-0.24-3.5731.013
13-1.163-3.5731.29-3.573
141.311-2.961-1.561-3.573
151.369-4.4-3.325-3.903
161.353-3.903-2.961-2.819
17-1.640.5040.714-2.234
18-0.7370.126-1.60.782
190.523-0.6280.256-0.721
200.613-0.5840.016-0.543