Model info
| Transcription factor | IRF2 (GeneCards) | ||||||||
| Model | IRF2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nRRWvhGAAASYGAAASYvv | ||||||||
| Best auROC (human) | 0.994 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 8 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 499 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-2 {3.5.3.0.2} | ||||||||
| HGNC | HGNC:6117 | ||||||||
| EntrezGene | GeneID:3660 (SSTAR profile) | ||||||||
| UniProt ID | IRF2_HUMAN | ||||||||
| UniProt AC | P14316 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | IRF2 expression | ||||||||
| ReMap ChIP-seq dataset list | IRF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 89.0 | 183.0 | 84.0 |
| 02 | 306.0 | 48.0 | 107.0 | 37.0 |
| 03 | 355.0 | 36.0 | 54.0 | 53.0 |
| 04 | 376.0 | 28.0 | 39.0 | 55.0 |
| 05 | 141.0 | 99.0 | 192.0 | 66.0 |
| 06 | 129.0 | 111.0 | 63.0 | 195.0 |
| 07 | 84.0 | 12.0 | 398.0 | 4.0 |
| 08 | 487.0 | 0.0 | 10.0 | 1.0 |
| 09 | 495.0 | 1.0 | 2.0 | 0.0 |
| 10 | 484.0 | 0.0 | 8.0 | 6.0 |
| 11 | 65.0 | 131.0 | 294.0 | 8.0 |
| 12 | 44.0 | 109.0 | 4.0 | 341.0 |
| 13 | 27.0 | 5.0 | 459.0 | 7.0 |
| 14 | 470.0 | 5.0 | 23.0 | 0.0 |
| 15 | 492.0 | 0.0 | 6.0 | 0.0 |
| 16 | 487.0 | 0.0 | 6.0 | 5.0 |
| 17 | 3.0 | 188.0 | 290.0 | 17.0 |
| 18 | 49.0 | 131.0 | 32.0 | 286.0 |
| 19 | 201.0 | 64.0 | 191.0 | 42.0 |
| 20 | 182.0 | 104.0 | 154.0 | 58.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.13 | -0.331 | 0.381 | -0.388 |
| 02 | 0.892 | -0.934 | -0.149 | -1.185 |
| 03 | 1.04 | -1.211 | -0.819 | -0.838 |
| 04 | 1.097 | -1.451 | -1.134 | -0.802 |
| 05 | 0.123 | -0.226 | 0.429 | -0.624 |
| 06 | 0.035 | -0.113 | -0.669 | 0.444 |
| 07 | -0.388 | -2.23 | 1.154 | -3.122 |
| 08 | 1.355 | -4.397 | -2.39 | -3.9 |
| 09 | 1.371 | -3.9 | -3.569 | -4.397 |
| 10 | 1.349 | -4.397 | -2.58 | -2.815 |
| 11 | -0.639 | 0.05 | 0.852 | -2.58 |
| 12 | -1.018 | -0.131 | -3.122 | 1.0 |
| 13 | -1.485 | -2.957 | 1.296 | -2.69 |
| 14 | 1.319 | -2.957 | -1.636 | -4.397 |
| 15 | 1.365 | -4.397 | -2.815 | -4.397 |
| 16 | 1.355 | -4.397 | -2.815 | -2.957 |
| 17 | -3.321 | 0.408 | 0.839 | -1.916 |
| 18 | -0.914 | 0.05 | -1.324 | 0.825 |
| 19 | 0.474 | -0.654 | 0.424 | -1.063 |
| 20 | 0.376 | -0.177 | 0.21 | -0.75 |