Transcription factor | Irf4 | ||||||||
Model | IRF4_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 20 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nddWWvvRGAASTGARAvhn | ||||||||
Best auROC (human) | 0.948 | ||||||||
Best auROC (mouse) | 0.981 | ||||||||
Peak sets in benchmark (human) | 19 | ||||||||
Peak sets in benchmark (mouse) | 61 | ||||||||
Aligned words | 502 | ||||||||
TF family | Interferon-regulatory factors {3.5.3} | ||||||||
TF subfamily | IRF-4 (LSIRF, NF-EM5, MUM1, Pip) {3.5.3.0.4} | ||||||||
MGI | MGI:1096873 | ||||||||
EntrezGene | GeneID:16364 (SSTAR profile) | ||||||||
UniProt ID | IRF4_MOUSE | ||||||||
UniProt AC | Q64287 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Irf4 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 83.0 | 16.0 | 67.0 | 14.0 | 38.0 | 15.0 | 8.0 | 20.0 | 47.0 | 11.0 | 48.0 | 13.0 | 35.0 | 19.0 | 36.0 | 30.0 |
02 | 119.0 | 11.0 | 41.0 | 32.0 | 26.0 | 7.0 | 7.0 | 21.0 | 96.0 | 15.0 | 25.0 | 23.0 | 22.0 | 17.0 | 14.0 | 24.0 |
03 | 193.0 | 19.0 | 23.0 | 28.0 | 30.0 | 3.0 | 10.0 | 7.0 | 57.0 | 12.0 | 14.0 | 4.0 | 31.0 | 13.0 | 17.0 | 39.0 |
04 | 206.0 | 16.0 | 42.0 | 47.0 | 32.0 | 4.0 | 3.0 | 8.0 | 38.0 | 1.0 | 18.0 | 7.0 | 20.0 | 1.0 | 7.0 | 50.0 |
05 | 65.0 | 34.0 | 179.0 | 18.0 | 10.0 | 8.0 | 1.0 | 3.0 | 20.0 | 7.0 | 33.0 | 10.0 | 26.0 | 9.0 | 70.0 | 7.0 |
06 | 39.0 | 16.0 | 63.0 | 3.0 | 47.0 | 5.0 | 5.0 | 1.0 | 146.0 | 48.0 | 71.0 | 18.0 | 9.0 | 6.0 | 21.0 | 2.0 |
07 | 17.0 | 5.0 | 217.0 | 2.0 | 58.0 | 3.0 | 12.0 | 2.0 | 50.0 | 3.0 | 105.0 | 2.0 | 5.0 | 3.0 | 16.0 | 0.0 |
08 | 20.0 | 6.0 | 103.0 | 1.0 | 3.0 | 4.0 | 6.0 | 1.0 | 28.0 | 10.0 | 307.0 | 5.0 | 2.0 | 0.0 | 4.0 | 0.0 |
09 | 46.0 | 3.0 | 0.0 | 4.0 | 14.0 | 3.0 | 1.0 | 2.0 | 399.0 | 1.0 | 5.0 | 15.0 | 6.0 | 1.0 | 0.0 | 0.0 |
10 | 430.0 | 4.0 | 9.0 | 22.0 | 5.0 | 2.0 | 0.0 | 1.0 | 3.0 | 2.0 | 1.0 | 0.0 | 11.0 | 1.0 | 1.0 | 8.0 |
11 | 43.0 | 236.0 | 164.0 | 6.0 | 1.0 | 3.0 | 4.0 | 1.0 | 3.0 | 2.0 | 5.0 | 1.0 | 4.0 | 17.0 | 10.0 | 0.0 |
12 | 2.0 | 6.0 | 2.0 | 41.0 | 27.0 | 19.0 | 4.0 | 208.0 | 6.0 | 10.0 | 10.0 | 157.0 | 1.0 | 0.0 | 1.0 | 6.0 |
13 | 3.0 | 0.0 | 33.0 | 0.0 | 7.0 | 0.0 | 28.0 | 0.0 | 0.0 | 0.0 | 16.0 | 1.0 | 11.0 | 0.0 | 399.0 | 2.0 |
14 | 12.0 | 0.0 | 8.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 420.0 | 2.0 | 48.0 | 6.0 | 0.0 | 0.0 | 2.0 | 1.0 |
15 | 289.0 | 11.0 | 110.0 | 22.0 | 2.0 | 0.0 | 0.0 | 0.0 | 19.0 | 2.0 | 31.0 | 6.0 | 3.0 | 0.0 | 5.0 | 0.0 |
16 | 287.0 | 10.0 | 9.0 | 7.0 | 5.0 | 3.0 | 1.0 | 4.0 | 110.0 | 11.0 | 13.0 | 12.0 | 18.0 | 4.0 | 2.0 | 4.0 |
17 | 92.0 | 209.0 | 109.0 | 10.0 | 11.0 | 11.0 | 1.0 | 5.0 | 13.0 | 11.0 | 1.0 | 0.0 | 8.0 | 11.0 | 3.0 | 5.0 |
18 | 42.0 | 27.0 | 21.0 | 34.0 | 36.0 | 90.0 | 6.0 | 110.0 | 30.0 | 28.0 | 11.0 | 45.0 | 4.0 | 3.0 | 4.0 | 9.0 |
19 | 43.0 | 17.0 | 36.0 | 16.0 | 64.0 | 23.0 | 25.0 | 36.0 | 7.0 | 13.0 | 11.0 | 11.0 | 46.0 | 49.0 | 56.0 | 47.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.969 | -0.658 | 0.756 | -0.788 | 0.193 | -0.721 | -1.328 | -0.439 | 0.404 | -1.022 | 0.425 | -0.86 | 0.112 | -0.49 | 0.14 | -0.04 |
02 | 1.328 | -1.022 | 0.269 | 0.023 | -0.181 | -1.454 | -1.454 | -0.392 | 1.114 | -0.721 | -0.22 | -0.302 | -0.346 | -0.599 | -0.788 | -0.26 |
03 | 1.81 | -0.49 | -0.302 | -0.108 | -0.04 | -2.234 | -1.114 | -1.454 | 0.595 | -0.938 | -0.788 | -1.975 | -0.008 | -0.86 | -0.599 | 0.219 |
04 | 1.875 | -0.658 | 0.293 | 0.404 | 0.023 | -1.975 | -2.234 | -1.328 | 0.193 | -3.126 | -0.543 | -1.454 | -0.439 | -3.126 | -1.454 | 0.465 |
05 | 0.726 | 0.083 | 1.735 | -0.543 | -1.114 | -1.328 | -3.126 | -2.234 | -0.439 | -1.454 | 0.054 | -1.114 | -0.181 | -1.215 | 0.8 | -1.454 |
06 | 0.219 | -0.658 | 0.695 | -2.234 | 0.404 | -1.77 | -1.77 | -3.126 | 1.532 | 0.425 | 0.814 | -0.543 | -1.215 | -1.6 | -0.392 | -2.584 |
07 | -0.599 | -1.77 | 1.927 | -2.584 | 0.613 | -2.234 | -0.938 | -2.584 | 0.465 | -2.234 | 1.203 | -2.584 | -1.77 | -2.234 | -0.658 | -4.4 |
08 | -0.439 | -1.6 | 1.184 | -3.126 | -2.234 | -1.975 | -1.6 | -3.126 | -0.108 | -1.114 | 2.274 | -1.77 | -2.584 | -4.4 | -1.975 | -4.4 |
09 | 0.383 | -2.234 | -4.4 | -1.975 | -0.788 | -2.234 | -3.126 | -2.584 | 2.536 | -3.126 | -1.77 | -0.721 | -1.6 | -3.126 | -4.4 | -4.4 |
10 | 2.61 | -1.975 | -1.215 | -0.346 | -1.77 | -2.584 | -4.4 | -3.126 | -2.234 | -2.584 | -3.126 | -4.4 | -1.022 | -3.126 | -3.126 | -1.328 |
11 | 0.316 | 2.011 | 1.648 | -1.6 | -3.126 | -2.234 | -1.975 | -3.126 | -2.234 | -2.584 | -1.77 | -3.126 | -1.975 | -0.599 | -1.114 | -4.4 |
12 | -2.584 | -1.6 | -2.584 | 0.269 | -0.144 | -0.49 | -1.975 | 1.885 | -1.6 | -1.114 | -1.114 | 1.604 | -3.126 | -4.4 | -3.126 | -1.6 |
13 | -2.234 | -4.4 | 0.054 | -4.4 | -1.454 | -4.4 | -0.108 | -4.4 | -4.4 | -4.4 | -0.658 | -3.126 | -1.022 | -4.4 | 2.536 | -2.584 |
14 | -0.938 | -4.4 | -1.328 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | 2.587 | -2.584 | 0.425 | -1.6 | -4.4 | -4.4 | -2.584 | -3.126 |
15 | 2.213 | -1.022 | 1.25 | -0.346 | -2.584 | -4.4 | -4.4 | -4.4 | -0.49 | -2.584 | -0.008 | -1.6 | -2.234 | -4.4 | -1.77 | -4.4 |
16 | 2.206 | -1.114 | -1.215 | -1.454 | -1.77 | -2.234 | -3.126 | -1.975 | 1.25 | -1.022 | -0.86 | -0.938 | -0.543 | -1.975 | -2.584 | -1.975 |
17 | 1.072 | 1.89 | 1.241 | -1.114 | -1.022 | -1.022 | -3.126 | -1.77 | -0.86 | -1.022 | -3.126 | -4.4 | -1.328 | -1.022 | -2.234 | -1.77 |
18 | 0.293 | -0.144 | -0.392 | 0.083 | 0.14 | 1.05 | -1.6 | 1.25 | -0.04 | -0.108 | -1.022 | 0.361 | -1.975 | -2.234 | -1.975 | -1.215 |
19 | 0.316 | -0.599 | 0.14 | -0.658 | 0.711 | -0.302 | -0.22 | 0.14 | -1.454 | -0.86 | -1.022 | -1.022 | 0.383 | 0.445 | 0.578 | 0.404 |