Model info
Transcription factorIRX2
ModelIRX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length19
Quality
D
Motif rank
0
ConsensusvbdbKdndKKdYRTGKdvd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19310
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyIRX (Iroquois){3.1.4.1}
HGNC14359
EntrezGene153572
UniProt IDIRX2_HUMAN
UniProt ACQ9BZI1
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.98831
0.0005 5.68491
0.0001 7.07341
GTEx tissue expression atlas IRX2 expression
ReMap ChIP-seq dataset list IRX2 datasets
Motifs in JASPAR
PCM
ACGT
017908.253455.254593.253349.25
023372.58285.53949.53698.5
038152.752474.754292.754385.75
042925.53019.55888.57472.5
052509.51521.512370.52904.5
063429.751944.758388.755542.75
072688.754104.756976.755535.75
085519.75947.754780.758057.75
091560.5760.58642.58342.5
102681.0565.012292.03768.0
114336.5546.57461.56961.5
121299.014092.0893.03022.0
139519.524.58849.5912.5
1425.5113.56436.512730.5
1523.020.019248.015.0
16983.251086.252504.2514732.25
176498.51603.54479.56724.5
184654.04166.07672.02814.0
193664.252653.257996.254992.25
PWM
ACGT
010.494-0.334-0.05-0.365
02-0.3580.54-0.2-0.266
030.524-0.667-0.117-0.096
04-0.5-0.4690.1990.437
05-0.654-1.1530.941-0.508
06-0.341-0.9080.5530.138
07-0.585-0.1620.3680.137
080.134-1.626-0.010.512
09-1.128-1.8450.5820.547
10-0.588-2.1410.935-0.247
11-0.107-2.1740.4350.366
12-1.3111.071-1.685-0.468
130.679-5.1880.606-1.663
14-5.151-3.7290.2880.97
15-5.245-5.371.383-5.622
16-1.589-1.49-0.6561.116
170.297-1.101-0.0750.331
18-0.036-0.1470.463-0.539
19-0.275-0.5980.5050.034