Model info
| Transcription factor | TCF4 (GeneCards) | ||||||||
| Model | ITF2_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dSCAGSTGbb | ||||||||
| Best auROC (human) | 0.949 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 499 | ||||||||
| TF family | E2A-related factors {1.2.1} | ||||||||
| TF subfamily | SEF2 (E2-2, TCF-4, ITF-2) {1.2.1.0.2} | ||||||||
| HGNC | HGNC:11634 | ||||||||
| EntrezGene | GeneID:6925 (SSTAR profile) | ||||||||
| UniProt ID | ITF2_HUMAN | ||||||||
| UniProt AC | P15884 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TCF4 expression | ||||||||
| ReMap ChIP-seq dataset list | TCF4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 153.0 | 21.0 | 190.0 | 133.0 |
| 02 | 63.0 | 73.0 | 340.0 | 21.0 |
| 03 | 14.0 | 445.0 | 26.0 | 12.0 |
| 04 | 466.0 | 4.0 | 13.0 | 14.0 |
| 05 | 15.0 | 52.0 | 410.0 | 20.0 |
| 06 | 47.0 | 293.0 | 149.0 | 8.0 |
| 07 | 45.0 | 3.0 | 4.0 | 445.0 |
| 08 | 2.0 | 7.0 | 473.0 | 15.0 |
| 09 | 42.0 | 53.0 | 229.0 | 173.0 |
| 10 | 46.0 | 136.0 | 263.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.206 | -1.719 | 0.42 | 0.067 |
| 02 | -0.667 | -0.523 | 0.999 | -1.719 |
| 03 | -2.091 | 1.267 | -1.519 | -2.228 |
| 04 | 1.313 | -3.121 | -2.157 | -2.091 |
| 05 | -2.028 | -0.854 | 1.185 | -1.764 |
| 06 | -0.952 | 0.851 | 0.18 | -2.578 |
| 07 | -0.994 | -3.319 | -3.121 | 1.267 |
| 08 | -3.567 | -2.689 | 1.328 | -2.028 |
| 09 | -1.061 | -0.836 | 0.606 | 0.328 |
| 10 | -0.973 | 0.089 | 0.743 | -0.854 |