Model info
Transcription factorTcf4
ModelITF2_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
B
Motif rank
0
ConsensusvCAGGTGYd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words553
TF familyE2A-related factors{1.2.1}
TF subfamilySEF2 (E2-2, TCF-4, ITF-2, MITF){1.2.1.0.2}
MGI98506
EntrezGene21413
UniProt IDITF2_MOUSE
UniProt ACQ60722
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.42711
0.0005 3.91728
0.0001 6.85841
GTEx tissue expression atlas Tcf4 expression
ReMap ChIP-seq dataset list Tcf4 datasets
Motifs in JASPAR
PCM
ACGT
01150.587155.415146.9920.526
020.0453.520.00.0
03453.520.00.00.0
040.00.0453.520.0
050.00.0453.520.0
060.00.00.526452.994
070.00.0453.520.0
0811.302299.0280.0143.19
09169.14436.455157.25390.668
PWM
ACGT
010.2810.3120.257-4.024
02-4.3191.376-4.319-4.319
031.376-4.319-4.319-4.319
04-4.319-4.3191.376-4.319
05-4.319-4.3191.376-4.319
06-4.319-4.319-4.0241.375
07-4.319-4.3191.376-4.319
08-2.1920.961-4.3190.231
090.396-1.1070.323-0.22