Model info
Transcription factorTcf4
ModelITF2_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
B
Motif rank
0
ConsensusvCAGGTGYd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words553
TF familyE2A-related factors{1.2.1}
TF subfamilySEF2 (E2-2, TCF-4, ITF-2, MITF){1.2.1.0.2}
MGI98506
EntrezGene21413
UniProt IDITF2_MOUSE
UniProt ACQ60722
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.41151
0.0005 3.9001
0.0001 6.801115
GTEx tissue expression atlas Tcf4 expression
Motifs in JASPAR
PCM
ACGT
01150.587155.415146.9920.526
020.0453.520.00.0
03453.520.00.00.0
040.00.0453.520.0
050.00.0453.520.0
060.00.00.526452.994
070.00.0453.520.0
0811.302299.0280.0143.19
09169.14436.455157.25390.668
PWM
ACGT
010.2810.3120.257-4.024
02-4.3191.376-4.319-4.319
031.376-4.319-4.319-4.319
04-4.319-4.3191.376-4.319
05-4.319-4.3191.376-4.319
06-4.319-4.319-4.0241.375
07-4.319-4.3191.376-4.319
08-2.1920.961-4.3190.231
090.396-1.1070.323-0.22