Model info
| Transcription factor | Klf4 | ||||||||
| Model | KLF4_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvvdvWGGGYGKGKM | ||||||||
| Best auROC (human) | 0.909 | ||||||||
| Best auROC (mouse) | 0.975 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 34 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Krüppel-like factors {2.3.1.2} | ||||||||
| MGI | MGI:1342287 | ||||||||
| EntrezGene | GeneID:16600 (SSTAR profile) | ||||||||
| UniProt ID | KLF4_MOUSE | ||||||||
| UniProt AC | Q60793 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Klf4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.0 | 72.0 | 171.0 | 172.0 |
| 02 | 131.0 | 92.0 | 235.0 | 42.0 |
| 03 | 143.0 | 103.0 | 210.0 | 44.0 |
| 04 | 231.0 | 60.0 | 146.0 | 63.0 |
| 05 | 128.0 | 118.0 | 235.0 | 19.0 |
| 06 | 171.0 | 9.0 | 79.0 | 241.0 |
| 07 | 53.0 | 2.0 | 443.0 | 2.0 |
| 08 | 14.0 | 0.0 | 446.0 | 40.0 |
| 09 | 29.0 | 22.0 | 442.0 | 7.0 |
| 10 | 58.0 | 116.0 | 8.0 | 318.0 |
| 11 | 48.0 | 5.0 | 439.0 | 8.0 |
| 12 | 11.0 | 3.0 | 217.0 | 269.0 |
| 13 | 37.0 | 4.0 | 408.0 | 51.0 |
| 14 | 32.0 | 20.0 | 361.0 | 87.0 |
| 15 | 75.0 | 341.0 | 35.0 | 49.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.38 | -0.543 | 0.31 | 0.316 |
| 02 | 0.046 | -0.302 | 0.626 | -1.067 |
| 03 | 0.133 | -0.191 | 0.514 | -1.022 |
| 04 | 0.608 | -0.721 | 0.154 | -0.673 |
| 05 | 0.023 | -0.057 | 0.626 | -1.818 |
| 06 | 0.31 | -2.484 | -0.452 | 0.651 |
| 07 | -0.841 | -3.573 | 1.256 | -3.573 |
| 08 | -2.096 | -4.4 | 1.263 | -1.114 |
| 09 | -1.421 | -1.681 | 1.254 | -2.694 |
| 10 | -0.754 | -0.074 | -2.584 | 0.926 |
| 11 | -0.938 | -2.961 | 1.247 | -2.584 |
| 12 | -2.311 | -3.325 | 0.546 | 0.76 |
| 13 | -1.189 | -3.126 | 1.174 | -0.879 |
| 14 | -1.328 | -1.77 | 1.053 | -0.357 |
| 15 | -0.503 | 0.996 | -1.242 | -0.918 |