Model info
Transcription factorLBX2
ModelLBX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusvYTAATTRGnb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1425
TF familyNK-related factors{3.1.2}
TF subfamilyLBX{3.1.2.10}
HGNC15525
EntrezGene85474
UniProt IDLBX2_HUMAN
UniProt ACQ6XYB7
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.50734
0.0005 5.79351
0.0001 8.09783
GTEx tissue expression atlas LBX2 expression
ReMap ChIP-seq dataset list LBX2 datasets
Motifs in JASPAR
PCM
ACGT
01364.0245.0648.0155.0
0280.75514.7572.75743.75
032.01.014.01395.0
041409.252.250.250.25
051408.00.02.02.0
060.011.03.01398.0
0732.06.052.01322.0
08781.7529.75583.7516.75
0963.2572.251230.2546.25
10186.75320.75489.75414.75
11142.25476.25211.25582.25
PWM
ACGT
010.031-0.3630.605-0.817
02-1.4580.376-1.560.743
03-4.533-4.837-3.1111.37
041.381-4.47-5.147-5.147
051.38-5.277-4.533-4.533
06-5.277-3.321-4.31.373
07-2.351-3.816-1.8861.317
080.792-2.420.501-2.95
09-1.696-1.5671.245-1.999
10-0.632-0.0950.3260.16
11-0.9010.298-0.510.498