Model info
Transcription factorLHX2
ModelLHX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbbYTAATTRvhb
Best auROC (human)0.8258327049886294
Best auROC (mouse)0.9306941113400594
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words430
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-2-like factors{3.1.5.3}
HGNC6594
EntrezGene9355
UniProt IDLHX2_HUMAN
UniProt ACP50458
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.84021
0.0005 6.62512
0.0001 7.96981
GTEx tissue expression atlas LHX2 expression
ReMap ChIP-seq dataset list LHX2 datasets
Motifs in JASPAR
PCM
ACGT
0157.076.0102.0195.0
0240.0113.0137.0140.0
0348.0186.07.0189.0
0412.05.00.0413.0
05333.076.017.04.0
06412.012.01.05.0
070.09.09.0412.0
084.06.0102.0318.0
09249.03.0152.026.0
1074.097.0212.047.0
1176.0104.054.0196.0
1238.092.0104.0196.0
PWM
ACGT
01-0.622-0.341-0.0520.589
02-0.9650.0490.2390.261
03-0.7890.542-2.550.558
04-2.088-2.817-4.2751.336
051.121-0.341-1.773-2.984
061.333-2.088-3.769-2.817
07-4.275-2.339-2.3391.333
08-2.984-2.674-0.0521.075
090.832-3.1840.342-1.377
10-0.367-0.1010.672-0.81
11-0.341-0.033-0.6750.594
12-1.015-0.153-0.0330.594