Model info
Transcription factorLhx2
ModelLHX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnhTAATKAGn
Best auROC (human)0.8141864819302432
Best auROC (mouse)0.9376743317240885
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words501
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-2-like factors{3.1.5.3}
MGI96785
EntrezGene16870
UniProt IDLHX2_MOUSE
UniProt ACQ9Z0S2
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.32189
0.0005 6.152235
0.0001 7.954005
GTEx tissue expression atlas Lhx2 expression
Motifs in JASPAR
PCM
ACGT
0194.084.0165.0157.0
0284.0118.065.0233.0
0327.03.04.0466.0
04445.011.041.03.0
05481.08.03.08.0
065.03.011.0481.0
079.07.0197.0287.0
08327.01.0171.01.0
0915.068.0395.022.0
1073.0144.0114.0169.0
PWM
ACGT
01-0.281-0.3920.2750.225
02-0.392-0.057-0.6430.617
03-1.489-3.325-3.1261.307
041.261-2.311-1.09-3.325
051.338-2.584-3.325-2.584
06-2.961-3.325-2.3111.338
07-2.484-2.6940.450.824
080.954-3.9030.31-3.903
09-2.034-0.5991.142-1.681
10-0.5290.14-0.0910.298