Model info
Transcription factorLhx2
ModelLHX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnhTAATKAGn
Best auROC (human)0.8141864819302432
Best auROC (mouse)0.9376743317240885
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words501
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-2-like factors{3.1.5.3}
MGI96785
EntrezGene16870
UniProt IDLHX2_MOUSE
UniProt ACQ9Z0S2
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.31755
0.0005 6.15814
0.0001 7.95868
GTEx tissue expression atlas Lhx2 expression
ReMap ChIP-seq dataset list Lhx2 datasets
Motifs in JASPAR
PCM
ACGT
0194.084.0165.0157.0
0284.0118.065.0233.0
0327.03.04.0466.0
04445.011.041.03.0
05481.08.03.08.0
065.03.011.0481.0
079.07.0197.0287.0
08327.01.0171.01.0
0915.068.0395.022.0
1073.0144.0114.0169.0
PWM
ACGT
01-0.281-0.3920.2750.225
02-0.392-0.057-0.6430.617
03-1.489-3.325-3.1261.307
041.261-2.311-1.09-3.325
051.338-2.584-3.325-2.584
06-2.961-3.325-2.3111.338
07-2.484-2.6940.450.824
080.954-3.9030.31-3.903
09-2.034-0.5991.142-1.681
10-0.5290.14-0.0910.298