Model info
Transcription factorLHX3
ModelLHX3_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
C
Motif rank
0
ConsensusddAWTTAATTAdh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words72
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-3-like factors{3.1.5.4}
HGNC6595
EntrezGene8022
UniProt IDLHX3_HUMAN
UniProt ACQ9UBR4
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.15142
0.0005 6.23335
0.0001 8.29203
GTEx tissue expression atlas LHX3 expression
ReMap ChIP-seq dataset list LHX3 datasets
Motifs in JASPAR
PCM
ACGT
0139.2195.20113.09514.485
0237.522.95315.36216.165
0357.2296.8377.3430.591
0442.2921.51911.26816.921
050.7590.5061.51969.216
060.00.00.75971.241
0772.00.00.00.0
0871.2410.00.7590.0
090.00.00.072.0
101.5620.7591.26668.413
1167.950.01.5192.531
1233.7646.79323.7617.681
1312.02818.57111.43729.964
PWM
ACGT
010.748-1.112-0.297-0.204
020.705-1.556-0.149-0.101
031.117-0.88-0.818-2.441
040.821-1.997-0.435-0.058
05-2.345-2.494-1.9971.304
06-2.881-2.881-2.3451.333
071.343-2.881-2.881-2.881
081.333-2.881-2.345-2.881
09-2.881-2.881-2.8811.343
10-1.98-2.345-2.11.293
111.286-2.881-1.997-1.667
120.603-0.8860.264-0.779
13-0.3760.03-0.4220.487