Model info
Transcription factorLhx3
ModelLHX3_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusnbTAATKRv
Best auROC (human)
Best auROC (mouse)0.9402365033295355
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words500
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-3-like factors{3.1.5.4}
MGI102673
EntrezGene16871
UniProt IDLHX3_MOUSE
UniProt ACP50481
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.81923
0.0005 6.29285
0.0001 6.95029
GTEx tissue expression atlas Lhx3 expression
ReMap ChIP-seq dataset list Lhx3 datasets
Motifs in JASPAR
PCM
ACGT
01113.0117.0162.0106.0
0234.0275.065.0124.0
03121.03.03.0371.0
04315.01.0180.02.0
05448.033.010.07.0
0610.01.055.0432.0
076.00.0215.0277.0
08242.022.0224.010.0
09221.0150.0117.010.0
PWM
ACGT
01-0.096-0.0610.26-0.159
02-1.2660.786-0.639-0.004
03-0.028-3.321-3.3211.084
040.921-3.90.365-3.569
051.272-1.294-2.39-2.69
06-2.39-3.9-0.8021.235
07-2.815-4.3970.5410.793
080.659-1.6770.582-2.39
090.5680.184-0.061-2.39