Model info
Transcription factorLhx3
ModelLHX3_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusnbTAATKRv
Best auROC (human)
Best auROC (mouse)0.9402365033295355
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words500
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-3-like factors{3.1.5.4}
MGI102673
EntrezGene16871
UniProt IDLHX3_MOUSE
UniProt ACP50481
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.81923
0.0005 6.29285
0.0001 6.95029
GTEx tissue expression atlas Lhx3 expression
Motifs in JASPAR
PCM
ACGT
01113.0117.0162.0106.0
0234.0275.065.0124.0
03121.03.03.0371.0
04315.01.0180.02.0
05448.033.010.07.0
0610.01.055.0432.0
076.00.0215.0277.0
08242.022.0224.010.0
09221.0150.0117.010.0
PWM
ACGT
01-0.096-0.0610.26-0.159
02-1.2660.786-0.639-0.004
03-0.028-3.321-3.3211.084
040.921-3.90.365-3.569
051.272-1.294-2.39-2.69
06-2.39-3.9-0.8021.235
07-2.815-4.3970.5410.793
080.659-1.6770.582-2.39
090.5680.184-0.061-2.39