Model info
Transcription factorLHX4
ModelLHX4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusdnvYTAATKdn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1423
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-3-like factors{3.1.5.4}
HGNC21734
EntrezGene89884
UniProt IDLHX4_HUMAN
UniProt ACQ969G2
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.14842
0.0005 6.80024
0.0001 7.96326
GTEx tissue expression atlas LHX4 expression
ReMap ChIP-seq dataset list LHX4 datasets
Motifs in JASPAR
PCM
ACGT
01551.098.0314.0450.0
02501.75328.75281.75300.75
03535.25212.25538.25127.25
0496.0498.091.0728.0
059.01.02.01401.0
061393.00.020.00.0
071412.00.01.00.0
085.750.752.751403.75
09166.5119.5280.5846.5
10770.25105.25401.25136.25
11400.75272.75444.75294.75
PWM
ACGT
010.443-1.269-0.1170.241
020.349-0.071-0.225-0.16
030.414-0.5060.419-1.012
04-1.2890.342-1.3420.72
05-3.492-4.838-4.5341.374
061.368-5.277-2.79-5.277
071.382-5.277-4.838-5.277
08-3.849-4.931-4.3541.376
09-0.746-1.074-0.2290.871
100.777-1.1990.127-0.945
110.126-0.2570.229-0.18