Model info
Transcription factorLHX6
ModelLHX6_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
D
Motif rank
0
ConsensusnnYTGATTRv
Best auROC (human)0.5666264560404038
Best auROC (mouse)0.949533880781138
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words444
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-6-like factors{3.1.5.5}
HGNC21735
EntrezGene26468
UniProt IDLHX6_HUMAN
UniProt ACQ9UPM6
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.65099
0.0005 6.63204
0.0001 8.11542
GTEx tissue expression atlas LHX6 expression
ReMap ChIP-seq dataset list LHX6 datasets
Motifs in JASPAR
PCM
ACGT
0183.0138.0110.0113.0
0258.0119.0131.0136.0
0315.0239.038.0152.0
042.00.01.0441.0
0559.02.0383.00.0
06443.00.01.00.0
071.02.02.0439.0
080.00.034.0410.0
09242.02.0188.012.0
1071.0181.0139.053.0
PWM
ACGT
01-0.2860.215-0.0090.018
02-0.6370.0690.1640.201
03-1.9180.76-1.0460.311
04-3.464-4.302-3.7971.369
05-0.62-3.4641.229-4.302
061.374-4.302-3.797-4.302
07-3.797-3.464-3.4641.365
08-4.302-4.302-1.1531.297
090.772-3.4640.521-2.119
10-0.4390.4840.222-0.725