Model info
Transcription factorLHX8
ModelLHX8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length18
Quality
D
Motif rank
0
ConsensushvYTAATTRShvhYWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words9063
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-6-like factors{3.1.5.5}
HGNC28838
EntrezGene431707
UniProt IDLHX8_HUMAN
UniProt ACQ68G74
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.76041
0.0005 5.48851
0.0001 8.23391
GTEx tissue expression atlas LHX8 expression
ReMap ChIP-seq dataset list LHX8 datasets
Motifs in JASPAR
PCM
ACGT
011694.03637.01623.02089.0
022779.251838.253942.25483.25
03248.54798.5638.53357.5
045.09.04.09025.0
055380.04.03659.00.0
069036.03.04.00.0
071.01.00.09041.0
081.030.034.08978.0
094614.01.04424.04.0
10496.255665.252688.25193.25
113713.752327.751319.751681.75
124820.751754.751313.751153.75
131979.51373.5587.55102.5
141202.51741.5469.55629.5
155450.75652.751076.751862.75
165539.75550.75976.751975.75
172148.25871.251124.254899.25
182045.01136.01450.04412.0
PWM
ACGT
01-0.2880.475-0.331-0.079
020.206-0.2070.556-1.539
03-2.20.752-1.2620.395
04-5.74-5.302-5.8871.384
050.866-5.8870.481-6.901
061.385-6.061-5.887-6.901
07-6.537-6.537-6.9011.385
08-6.537-4.25-4.1331.378
090.713-6.5370.671-5.887
10-1.5130.9180.173-2.449
110.4960.029-0.538-0.296
120.757-0.253-0.542-0.672
13-0.133-0.498-1.3450.813
14-0.63-0.261-1.5680.912
150.879-1.24-0.741-0.193
160.896-1.409-0.838-0.135
17-0.051-0.952-0.6980.773
18-0.1-0.687-0.4440.668