Model info
Transcription factorLHX9
ModelLHX9_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length18
Quality
D
Motif rank
0
ConsensusbTAATTARbnhhWWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4409
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-2-like factors{3.1.5.3}
HGNC14222
EntrezGene56956
UniProt IDLHX9_HUMAN
UniProt ACQ9NQ69
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.66631
0.0005 5.98601
0.0001 8.50231
GTEx tissue expression atlas LHX9 expression
ReMap ChIP-seq dataset list LHX9 datasets
Motifs in JASPAR
PCM
ACGT
01567.01936.0663.01235.0
0264.75407.7559.753868.75
034326.069.02.04.0
044396.251.252.251.25
050.252.250.254398.25
062.257.2595.254296.25
073527.251.25870.252.25
08951.25614.252686.25149.25
09293.51896.5700.51510.5
101053.751114.75826.751405.75
111486.751009.75484.751419.75
121588.5679.5293.51839.5
131679.5341.5132.52247.5
142240.5177.546.51936.5
152269.5118.5149.51863.5
161743.5184.5349.52123.5
171463.25310.25663.251964.25
181497.5501.5923.51478.5
PWM
ACGT
01-0.6610.564-0.5050.115
02-2.803-0.989-2.8811.256
031.368-2.741-5.595-5.197
041.384-5.797-5.536-5.797
05-6.152-5.536-6.1521.384
06-5.536-4.77-2.4271.361
071.164-5.797-0.234-5.536
08-0.145-0.5810.891-1.986
09-1.3160.544-0.450.316
10-0.0430.013-0.2850.245
110.301-0.086-0.8170.255
120.367-0.481-1.3160.513
130.422-1.166-2.1030.713
140.71-1.814-3.1220.565
150.723-2.213-1.9840.526
160.46-1.776-1.1430.657
170.285-1.261-0.5050.579
180.308-0.783-0.1750.295