Model info
Transcription factorLMX1A
ModelLMX1A_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length19
Quality
D
Motif rank
0
ConsensusYAATTAAWWnKnYWATTWn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words23
TF familyHD-LIM factors{3.1.5}
TF subfamilyLmx{3.1.5.6}
HGNC6653
EntrezGene4009
UniProt IDLMX1A_HUMAN
UniProt ACQ8TE12
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.00641
0.0005 6.89431
0.0001 8.73811
GTEx tissue expression atlas LMX1A expression
ReMap ChIP-seq dataset list LMX1A datasets
Motifs in JASPAR
PCM
ACGT
011.755.751.7513.75
0220.50.50.51.5
0321.00.00.02.0
040.01.00.022.0
050.01.00.022.0
0623.00.00.00.0
0719.01.03.00.0
084.03.01.015.0
095.00.02.016.0
109.03.03.08.0
111.04.06.012.0
123.02.09.09.0
133.05.00.015.0
1411.03.01.08.0
1517.01.00.05.0
167.00.00.016.0
175.250.250.2517.25
1811.01.03.08.0
199.51.52.59.5
PWM
ACGT
01-0.9470.0-0.9470.799
021.181-1.627-1.627-1.051
031.204-2.121-2.121-0.853
04-2.121-1.298-2.1211.249
05-2.121-1.298-2.1211.249
061.292-2.121-2.121-2.121
071.108-1.298-0.546-2.121
08-0.312-0.546-1.2980.882
09-0.122-2.121-0.8530.943
100.404-0.546-0.5460.296
11-1.298-0.3120.0380.671
12-0.546-0.8530.4040.404
13-0.546-0.122-2.1210.882
140.59-0.546-1.2980.296
151.001-1.298-2.121-0.122
160.175-2.121-2.1210.943
17-0.08-1.844-1.8441.015
180.59-1.298-0.5460.296
190.454-1.051-0.6880.454