Model info
Transcription factorLMX1B
ModelLMX1B_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length18
Quality
D
Motif rank
0
ConsensusTAATTAAYWvvbWhWWWW
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words35
TF familyHD-LIM factors{3.1.5}
TF subfamilyLmx{3.1.5.6}
HGNC6654
EntrezGene4010
UniProt IDLMX1B_HUMAN
UniProt ACO60663
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.98641
0.0005 6.83251
0.0001 8.58381
GTEx tissue expression atlas LMX1B expression
ReMap ChIP-seq dataset list LMX1B datasets
Motifs in JASPAR
PCM
ACGT
011.3812.1671.38125.01
0227.3690.5940.5941.381
0326.1850.1970.1973.361
040.9832.5750.19726.185
050.01.5920.028.347
0629.9390.00.00.0
0723.6294.7371.5730.0
087.0779.4370.013.425
0910.2230.02.37817.338
1010.2235.50511.0663.146
1112.60111.0473.9322.359
124.7189.4554.73711.028
135.5053.1461.57319.716
1410.2423.9512.37813.368
1516.1441.9890.39811.407
1613.7850.3980.39815.358
1710.8360.5941.38117.127
189.6432.5652.56515.166
PWM
ACGT
01-1.318-1.016-1.3181.132
021.22-1.753-1.753-1.318
031.177-2.075-2.075-0.683
04-1.515-0.889-2.0751.177
05-2.283-1.228-2.2831.254
061.307-2.283-2.283-2.283
071.077-0.4-1.236-2.283
08-0.050.21-2.2830.538
090.284-2.283-0.9490.78
100.284-0.2710.357-0.735
110.4790.356-0.556-0.954
12-0.4030.212-0.40.354
13-0.271-0.735-1.2360.903
140.286-0.552-0.9490.534
150.712-1.077-1.8990.386
160.563-1.899-1.8990.665
170.338-1.753-1.3180.769
180.23-0.892-0.8920.653