Model info
| Transcription factor | MBD2 (GeneCards) | ||||||||
| Model | MBD2_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nSGGCCGGMKv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 113 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | HGNC:6917 | ||||||||
| EntrezGene | GeneID:8932 (SSTAR profile) | ||||||||
| UniProt ID | MBD2_HUMAN | ||||||||
| UniProt AC | Q9UBB5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MBD2 expression | ||||||||
| ReMap ChIP-seq dataset list | MBD2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 16.778 | 44.413 | 44.413 | 4.935 |
| 02 | 5.922 | 43.426 | 51.322 | 9.87 |
| 03 | 0.0 | 27.635 | 82.904 | 0.0 |
| 04 | 0.0 | 0.0 | 57.243 | 53.295 |
| 05 | 0.0 | 110.539 | 0.0 | 0.0 |
| 06 | 0.0 | 110.539 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 110.539 | 0.0 |
| 08 | 0.0 | 0.0 | 110.539 | 0.0 |
| 09 | 59.217 | 39.478 | 11.843 | 0.0 |
| 10 | 11.843 | 11.843 | 65.139 | 21.713 |
| 11 | 35.53 | 13.817 | 53.295 | 7.896 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.473 | 0.459 | 0.459 | -1.551 |
| 02 | -1.401 | 0.437 | 0.6 | -0.959 |
| 03 | -3.198 | 0.0 | 1.071 | -3.198 |
| 04 | -3.198 | -3.198 | 0.707 | 0.637 |
| 05 | -3.198 | 1.355 | -3.198 | -3.198 |
| 06 | -3.198 | 1.355 | -3.198 | -3.198 |
| 07 | -3.198 | -3.198 | 1.355 | -3.198 |
| 08 | -3.198 | -3.198 | 1.355 | -3.198 |
| 09 | 0.74 | 0.344 | -0.794 | -3.198 |
| 10 | -0.794 | -0.794 | 0.834 | -0.23 |
| 11 | 0.242 | -0.653 | 0.637 | -1.156 |