Model info
Transcription factorMEF2A
ModelMEF2A_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusddYTATTTWWRRh
Best auROC (human)0.9462534498691607
Best auROC (mouse)0.9730203117895189
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words500
TF familyRegulators of differentiation{5.1.1}
TF subfamilyMEF-2{5.1.1.1}
HGNC6993
EntrezGene4205
UniProt IDMEF2A_HUMAN
UniProt ACQ02078
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.49741
0.0005 6.47571
0.0001 8.34021
GTEx tissue expression atlas MEF2A expression
ReMap ChIP-seq dataset list MEF2A datasets
Motifs in JASPAR
PCM
ACGT
01137.039.0122.0202.0
0264.040.0194.0202.0
0314.0362.025.099.0
041.028.00.0471.0
05464.03.04.029.0
0632.01.04.0463.0
0751.01.02.0446.0
087.024.05.0464.0
0967.041.06.0386.0
1070.018.058.0354.0
11275.01.0218.06.0
1280.019.0329.072.0
13180.0192.052.076.0
PWM
ACGT
010.091-1.138-0.0240.475
02-0.658-1.1140.4350.475
03-2.0961.055-1.561-0.23
04-3.903-1.454-4.41.317
051.303-3.325-3.126-1.421
06-1.328-3.903-3.1261.3
07-0.879-3.903-3.5731.263
08-2.694-1.6-2.9611.303
09-0.613-1.09-2.8191.119
10-0.57-1.868-0.7541.033
110.782-3.9030.551-2.819
12-0.439-1.8180.96-0.543
130.3610.425-0.86-0.49