Model info
Transcription factorMef2a
ModelMEF2A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusddYTATTTWWRKhh
Best auROC (human)0.940013896509377
Best auROC (mouse)0.9843573013027076
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words498
TF familyRegulators of differentiation{5.1.1}
TF subfamilyMEF-2{5.1.1.1}
MGI99532
EntrezGene17258
UniProt IDMEF2A_MOUSE
UniProt ACQ60929
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.51561
0.0005 6.36341
0.0001 8.10982
GTEx tissue expression atlas Mef2a expression
ReMap ChIP-seq dataset list Mef2a datasets
Motifs in JASPAR
PCM
ACGT
01144.040.0112.0201.0
0261.041.0190.0205.0
0325.0339.027.0106.0
048.039.04.0446.0
05451.07.017.022.0
0638.010.06.0443.0
0728.08.07.0454.0
0828.028.010.0431.0
0987.062.013.0335.0
1074.014.042.0367.0
11305.06.0176.010.0
1268.025.0334.070.0
13159.0200.056.082.0
14179.0103.051.0164.0
PWM
ACGT
010.146-1.108-0.1020.476
02-0.699-1.0840.420.496
03-1.5560.996-1.483-0.157
04-2.578-1.132-3.1211.269
051.28-2.689-1.914-1.675
06-1.157-2.388-2.8131.262
07-1.449-2.578-2.6891.287
08-1.449-1.449-2.3881.235
09-0.351-0.683-2.1570.984
10-0.51-2.091-1.0611.075
110.891-2.8130.345-2.388
12-0.593-1.5560.981-0.564
130.2440.471-0.782-0.409
140.361-0.185-0.8730.275