Model info
Transcription factorMEF2C
ModelMEF2C_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusddYTATTTWWRRh
Best auROC (human)0.9592427525419638
Best auROC (mouse)0.877226189746602
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)9
Aligned words500
TF familyRegulators of differentiation{5.1.1}
TF subfamilyMEF-2{5.1.1.1}
HGNC6996
EntrezGene4208
UniProt IDMEF2C_HUMAN
UniProt ACQ06413
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.48731
0.0005 6.42561
0.0001 8.28981
GTEx tissue expression atlas MEF2C expression
ReMap ChIP-seq dataset list MEF2C datasets
Motifs in JASPAR
PCM
ACGT
01149.037.0142.0172.0
0252.046.0210.0192.0
0315.0346.023.0116.0
041.031.00.0468.0
05474.08.03.015.0
0630.03.01.0466.0
0740.06.03.0451.0
0812.019.05.0464.0
0974.045.011.0370.0
1069.021.061.0349.0
11283.02.0211.04.0
1277.036.0317.070.0
13180.0182.051.087.0
PWM
ACGT
010.174-1.1890.1260.316
02-0.86-0.9790.5140.425
03-2.0341.01-1.64-0.074
04-3.903-1.358-4.41.311
051.324-2.584-3.325-2.034
06-1.389-3.325-3.9031.307
07-1.114-2.819-3.3251.274
08-2.234-1.818-2.9611.303
09-0.516-1.0-2.3111.077
10-0.584-1.725-0.7051.019
110.81-3.5730.519-3.126
12-0.477-1.2150.923-0.57
130.3610.372-0.879-0.357